Microarray

Instrumentation | Fees for Services | Sample Preparation, Handling and QC | Procedure for Submitting Samples
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Useful Links

Manuals

Here are some of the frequently used manuals used by the microarray core:

• Affymetrix 500K SNP array protocol - Affy 500k Assay Manual
• Affymetrix Genechip expression array protocol - Affy Expression Protocol
• Affymetrix Whole Transcript sense target labeling assay manual - Affy WT sensetarget label manual
• Agilent hybridization chamber user manual - Agilent hyb chamber user guide 00061330
• Agilent bioanalyzer user's guide - Bioanalyzer 2100 user guide
• Agilent bioanalyzer maintenance and troubleshooting guide - Bioanalyzer 2100 Maintenance and Troubleshooting
• Affymetrix enzo Small Sample Target Labeling Assay - Enzo
• Eppendorf DualChip indirect labeling protocol - Eppendorf DualChip V3 indirect
• Eppendorf DualChip silver labeling protocol - Eppendorf DualChip V3 Silver
• Nanodrop 1000 user manual - Nanodrop 1000 users manual
• Qiagen Tissuelyser Handbook - TissueLyser Handbook
• Qiagen Tissuelyser Operating Manual - Tissuelyser operating manual
• Vector NTI user manual - VectorNTI v.10 users manual

Overview and Reference Sites:

• http://www.nslij-genetics.org/microarray/core.html
• http://linkage.rockefeller.edu/wli/microarray/
• http://info.med.yale.edu/wmkeck/affymetrix/analysis.htm
• http://www.bsi.vt.edu/ralscher/gridit/
• http://www.gene-chips.com/
• http://www.nhgri.nih.gov/DIR/Microarray/main.html
• http://ihome.cuhk.edu.hk/~b400559/array.html

Resources:

• http://stress-genomics.org/stress.fls/expression/array_tech/trouble_shooting/troubles_index.htm
• http://www.chip.org/chip2003/
• http://www.ebi.ac.uk/microarray/
• http://cmgm.stanford.edu/pbrown/mguide/index.html
• http://www.microarrays.org/
• http://www.mcb.arizona.edu/wardlab/microarray.html
• http://oz.berkeley.edu/users/terry/zarray/Html/
• http://biosun1.harvard.edu/complab/

Limited list of vendors of microarray related products

• Affymetrix
• Agilent
• Ambion
• Clontech
• Genisphere
• MWG Biotech
• Perkin-Elmer
• ResGen
• Stratagene
• Telechem

Limited list of vendors and academic providers of microarray analysis software

• Silicon Genetics (GeneSpring)
• BioDiscovery (Imagene and Genesight)
• Affymetrix (Microarray analysis suite and Data Mining Tools)
• Rosetta (Rosetta Resolver)
• The Institute for Genomic Research
• WingWong at Harvard (dChip)
• Speed lab

Instrumentation | Fees for Services | Sample Preparation, Handling and QC | Procedure for Submitting Samples
Turn around Time | Frequently Asked Questions | Useful Links